Computing the Number of Longest Common Subsequences

This note provides very simple, efficient algorithms for computing the number of distinct longest common subsequences of two input strings and for computing the number of LCS embeddings.Comment: 3 pages, LaTe

Bounds on the Number of Longest Common Subsequences

This paper performs the analysis necessary to bound the running time of known, efficient algorithms for generating all longest common subsequences. That is, we bound the running time as a function of input size for algorithms with time essentially proportional to the output size. This paper considers both the case of computing all distinct LCSs and the case of computing all LCS embeddings. Also included is an analysis of how much better the efficient algorithms are than the standard method of generating LCS embeddings. A full analysis is carried out with running times measured as a function of the total number of input characters, and much of the analysis is also provided for cases in which the two input sequences are of the same specified length or of two independently specified lengths.Comment: 13 pages. Corrected typos, corrected operation of hyperlinks, improved presentatio

On the Area of Hypercube Layouts

This paper precisely analyzes the wire density and required area in standard layout styles for the hypercube. The most natural, regular layout of a hypercube of N^2 nodes in the plane, in a N x N grid arrangement, uses floor(2N/3)+1 horizontal wiring tracks for each row of nodes. (The number of tracks per row can be reduced by 1 with a less regular design.) This paper also gives a simple formula for the wire density at any cut position and a full characterization of all places where the wire density is maximized (which does not occur at the bisection).Comment: 8 pages, 4 figures, LaTe

Finding Connected Components on a Scan Line Array Processor

This paper provides a new approach to labeling the connected components of an n x n image on a scan line array processor (comprised of n processing elements). Variations of this approach yield an algorithm guaranteed to complete in o(n lg n) time as well as algorithms likely to approach O(n) time for all or most images. The best previous solutions require using a more complicated architecture or require Omega(n lg n) time. We also show that on a restricted version of the architecture, any algorithm requires Omega(n lg n) time in the worst case

The Fat-Pyramid and Universal Parallel Computation Independent of Wire Delay

This paper shows that a fat-pyramid of area Θ(A) requires only O(log A) slowdown to simulate any competing network of area A under very general conditions. The result holds regardless of the processor size (amount of attached memory) and number of processors in the competing networks as long as the limitation on total area is met. Furthermore, the result is valid regardless of the relationship between wire length and wire delay. We especially focus on elimination of the common simplifying assumption that unit time suffices to traverse a wire regardless of its length, since the assumption becomes more and more untenable as the size of parallel systems increases. This paper concentrates on simulation using transmission lines (wires along which bits can be pipelined) with the message routing schedule set up off line, but it also discusses the extension to on-line simulation. This paper also examines the capabilities of a fat-pyramid when matched against a substantially larger network and points out the surprising difficulty of doing such a comparison without the unit wire delay assumption

My Materials Supporting the Exploring Computer Science Curriculum

Ready-made handouts and other resources supporting the Exploring Computer Science (introductory high school) curriculum are provided for Units 1 through 3. These materials were based on version 4 of the ECS curriculum but should remain relevant in later versions as well

Randomized Routing on Fat-trees

Fat-trees are a class of routing networks for hardware-efficient parallel computation. This paper presents a randomized algorithm for routing messages on a fat-tree. The quality of the algorithm is measured in terms of the load factor of a set of messages to be routed, which is a lower bound on the time required to deliver the messages. We show that if a set of messages has load factor lambda on a fat-tree with n processors, the number of delivery cycles (routing attempts) that the algorithm requires is O(lambda+lgnlglgn) with probability 1-O(1/n). The best previous bound was O(lambdalgn) for the off-line problem in which the set of messages is known in advance. In the context of a VLSI model that equates hardware cost with physical volume, the routing algorithm can be used to demonstrate that fat-trees are universal routing networks. Specifically, we prove that any routing network can be efficiently simulated by a fat-tree of comparable hardware cost

Pythagorean Combinations for LEGO Robot Building.

This paper provides tips for LEGO robot construction involving bracing or gear meshing along a diagonal using standard Botball kits

The Fat-Pyramid: A Robust Network for Parallel Computation

This paper shows that a fat-pyramid of area Theta(A) built from processors of size lg A requires only O(lg^2 A) slowdown in bit-times to simulate any network of area A under very general conditions. Specifically, there is no restriction on processor size (amount of attached memory) or number of processors in the competing network, nor is the assumption of unit wire delay required. This paper also derives upper bounds on the slowdown required by a fat-pyramid to simulate a network of larger area in the case of unit wire delay

Efficient Interconnection Schemes for VLSI and Parallel Computation

This thesis is primarily concerned with two problems of interconnecting components in VLSI technologies. In the first case, the goal is to construct efficient interconnection networks for general-purpose parallel computers. The second problem is a more specialized problem in the design of VLSI chips, namely multilayer channel routing. In addition, a final part of this thesis provides lower bounds on the area required for VLSI implementations of finite-state machines. This thesis shows that networks based on Leiserson\u27s fat-tree architecture are nearly as good as any network built in a comparable amount of physical space. It shows that these universal networks can efficiently simulate competing networks by means of an appropriate correspondence between network components and efficient algorithms for routing messages on the universal network. In particular, a universal network of area A can simulate competing networks with O(lg^3A) slowdown (in bit-times), using a very simple randomized routing algorithm and simple network components. Alternatively, a packet routing scheme of Leighton, Maggs, and Rao can be used in conjunction with more sophisticated switching components to achieve O(lg^2 A) slowdown. Several other important aspects of universality are also discussed. It is shown that universal networks can be constructed in area linear in the number of processors, so that there is no need to restrict the density of processors in competing networks. Also results are presented for comparisons between networks of different size or with processors of different sizes (as determined by the amount of attached memory). Of particular interest is the fact that a universal network built from sufficiently small processors can simulate (with the slowdown already quoted) any competing network of comparable size regardless of the size of processors in the competing network. In addition, many of the results given do not require the usual assumption of unit wire delay. Finally, though most of the discussion is in the two-dimensional world, the results are shown to apply in three dimensions by way of a simple demonstration of general results on graph layout in three dimensions. The second main problem considered in this thesis is channel routing when many layers of interconnect are available, a scenario that is becoming more and more meaningful as chip fabrication technologies advance. This thesis describes a system MulCh for multilayer channel routing which extends the Chameleon system developed at U. C. Berkeley. Like Chameleon, MulCh divides a multilayer problem into essentially independent subproblems of at most three layers, but unlike Chameleon, MulCh considers the possibility of using partitions comprised of a single layer instead of only partitions of two or three layers. Experimental results show that MulCh often performs better than Chameleon in terms of channel width, total net length, and number of vias. In addition to a description of MulCh as implemented, this thesis provides improved algorithms for subtasks performed by MulCh, thereby indicating potential improvements in the speed and performance of multilayer channel routing. In particular, a linear time algorithm is given for determining the minimum width required for a single-layer channel routing problem, and an algorithm is given for maintaining the density of a collection of nets in logarithmic time per net insertion. The last part of this thesis shows that straightforward techniques for implementing finite-state machines are optimal in the worst case. Specifically, for any s and k, there is a deterministic finite-state machine with s states and k symbols such that any layout algorithm requires (ks lg s) area to lay out its realization. For nondeterministic machines, there is an analogous lower bound of (ks^2) area